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====== Davyd Perdomo's Research Logs and Meeting Notes ======


===== Research Log =====
==== May 26, 2024 ====
=== Items Finished ===  
  * Complete on my on-board tasks.
  * Downloaded OpenFoam on Aircraft
=== Working On ===
  *Running an example on OpenFoam
  *Learning commands for Linux

==== July 6, 2024 ====
=== Items Finished ===  
  * Ran OpenFOAM Docker image on Littlestorm. Following this procedure:
1)Edit your ~/.bashrc file and add the line: export XAUTHORITY=$HOME/.Xauthority

2)Start with "Step 5: Launching openfoam11-linux" at the following link [[https://openfoam.org/download/11-linux/]]  However, when you get to the last line that launches "openfoam11-linux" ,  you instead need to launch it like this: openfoam11-linux -p 510 -xhost  <--This will ensure that graphical programs get passed through and show up correctly when xforwarding.   You may not need the extra flags if you are using a VNC session.

3)Once in the container, return to [[https://openfoam.org/download/11-linux/]], and go to Step 6: Testing openfoam11-linux. This should ensure that everything is set correctly and afterward you should be ready to work with the program.
  * Cloned Joe O'Brien's dissertation repository from [[https://github.com/jrobrien91/dissertation]]


=== Working On ===
  *Running PyVista on Littlestorm.
  *Setting up OpenFOAM wiki page.
  *Running first iteration from O'Brien's dissertation.

===== Meetings =====
==== May 22, 2024 ====
=== Discussions ===
  * Davyd requested access to new Wiki site, please put weekly Research Log on this page.
  * Davyd read over Thesis. Talked about software. Talked about Docker.
  * ParaView - Could not run on Aircraft because of memory.  Maybe Littlestorm is better.
  * Got OpenFoam running on Aircraft using notes at [[https://develop.openfoam.com/Development/openfoam/-/wikis/precompiled/docker#running-openfoam-in-a-container|https://develop.openfoam.com/Development/openfoam/-/wikis/precompiled/docker#running-openfoam-in-a-container]] 

=== Tasks ===
  * Davyd - Send email Invite for next Wednesday at 3 pm CT.
  * Davyd/David - Should clone the Joe repository, https://github.com/jrobrien91
  * Davyd - Try to run some example OpenFOAM / Tutorials.


==== May 29, 2024 ====
=== Discussions ===
  * File permission error.
  * Got docker to run.
  * Emailed Joe about clone his repository.

Tasks
  *  Davyd - See about getting openFOAM working on Littlestorm.


==== June 27, 2024 (2 pm) ====
=== Discussions ===
  * VPN was blocking connection to Little storm.
  * New problem - Lock screen on Littlestorm, just locked. Emailed Derek.
  * Joe sent link, after making public. Worked on getting clone of the repository.
  * ParaView, (or PyVista (Joe used)), We should start with PyVista.
  * Note: On Little storm, we should try to install all the latest software.
  * Monday July 8, 8 am CT, zoom. Send me invite.

Tasks
  * Add to Wiki page the Joe github repository cloning.
  * Add to Wiki information from Joe about getting OpenFOAM running on a workstation.
  * Run openFOAM docker image on Littlestorm.
  * Run PyVista on Littlestorm.
    
==== July 17, 2024 ====
=== Discussion ===
  * Talked with Joe O'Brien. Got data collection document done.  Upload data to One Drive
  * Five figure. Have title, Joe further ahead.
  * Filters from CapeEx19.  August/September. Look for the August 3 case.
  * Hopefully, in a week or so, you can download the data collection.
  * Tried to run in OpenFOAM, version 11.  Were running OpenFOAM version 8.  Getting error.
    * Try to debug the error and syntax.
  * Find templates. Points file.
  * What is the global path to aircraft sim directory.  Use pwd command.
  * Create shared directory on /nas/home/OpenFOAM
  
=== Tasks ===
  * David - Send to library and Davyd test.
  * Davyd - Get the data set from the library data collection and put on Littlestorm. 
  * David - Send email to John Wold to get Davyd full access to the Wiki site.
  * Davyd - Run BlockMesh command on Aircraft to see if it works with older version
  
  
==== August 7, 2024 ====
=== Discussion ===
  * Discussed our travel.
  * Fixed some syntax to get things to update configuration file for version 11 from version 8.
  * What the next step. 
    * Reproduce a figure in the Thesis.
    * Check on if there is sufficient information in the Thesis provide.
  * Davyd has everything shown in Thesis Figure 11.
  * See if there is sufficient information.
  * Asked about the sudo commands. 
    * If we need to do things requiring sudo, we need to talk with Derek.
  * Use the 'top' from shell to see what process are running and how much memory is used.
  * Next meet, Wednesday. We can figure out time.

=== Tasks ===
  * Davyd - Update with information on Wiki about the change.
  * David - Get working to download Joe's 86 GB file, and get link to Data Collection.
  * Davyd - Try to run OpenFOAM simulation to generated files for creating Figure 12 and maybe Figure 13.


==== August 21, 2024 ====
=== Discussion ===
  * Davyd attend the August 19/20 Python Workshop. All set now to write code for analyzing output for OpenFOAM.
  * Put in request to John Wold to access full Wiki site so Davyd can update OpenFOAM page.
  * Put in request to to get special permission for ATSC 494-07.

=== Tasks ===
  * Davyd - Update with information on Wiki about the change.
  * David - Get working to download Joe's 86 GB file, and get link to Data Collection.
  * Davyd - Try to run OpenFOAM simulation to generated files for creating Figure 12 and maybe Figure 13.

===== September 24, 2024 =====
=== Discussion ===
  * Davyd has updated the Wiki page about login and sets to run OpenFOAM.
  * Davyd was missing an object, tried aircraft.  Littlestorm has OpenFOAM version 11, on Aircraft has OpenFOAM version 7 or 8. 
  * Litlestorm issue, documented below.  Getting the "solutions" file posted from Joe.  Located on Littlestorm at /nas/home/Radar_Data/obrien/obrien-oracles-solutions.tar.gz.

=== Tasks ===
  * David - Move files to /nas/home/Radar_Data/obrien/obrien-oracles-solutions.tar.gz and uncompressed archive.
  * Email Joe O'brien to see about his paper.
  * Davyd - Email Derek to see if he can install Docker and OpenFOAM7 on aircraft.
  * Davyd - Look at the "solutions" file to see if you can locate files you need (missing object). 
  * Davyd - Send Invite for next Thursday, at 3:00 pm

===== October 3, 2024 =====
=== Discussion ===
  * "solutions" file unzipped to /nas/home/Radar_Data/Obrien/solutions.
  * .obj and CAD files not located.

=== Tasks ===
  * Davyd - Email Joe O'brien about getting the CAD files.