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--- atmos:software:matlab:phips_classifier [2024/07/14 20:10] – delene
+++ atmos:software:matlab:phips_classifier [2024/12/20 22:18] (current) – delene
@@ Line 10: / Line 10: @@
 ==== January 15, 2023 IMPACTS Flight (15:25:40 - 16:24:03) ====
-  * Working Directory: /nas/und/NorthEast/2023/Aircraft/P3_N426NA/FlightData/20230115_1/Analysis/cpi_indivi_images_test/20230115_FL1608_Classification
+. Working Directory: /nas/und/NorthEast/2023/Aircraft/P3_N426NA/FlightData/20230115_1/Analysis/cpi_indivi_images_test/20230115_FL1608_Classification
-  * Note that you need images in directory YYYYMMDDHHMMSS_C1 and YYYYMMDDHHMMSS_C1 these contain ROI files. These ROI come from CPI software. For example, 20230115161313_C1 and 20230115161313_C2
+    * Type cd, and above directory following.
-  * Run the software:
+  * Note that you need images in directory YYYYMMDDHHMMSS_C1 and YYYYMMDDHHMMSS_C1 these contain ROI files. These ROI come from CPI software. For example, 20230115161313_C1 and 20230115161313_C2. To check use:
-    * Type matlab in termial.
+    * ls -d 20230115160712_C*
-    * In Current Folder double click, PHIPS_Image_Classifier_8_2.mlapp to start software.
+      * 20230115160712_C1  20230115160712_C2
-    * Click on "Choose Folder ofr PHIPS Data, choose current folder.
+. Run the software:
-    * In 2: Classier Put in Last Name
+    * Type matlab in terminal.
-    * In 3: Select Make New Classification
+      * Expand window so everything is visible.
+. In Current Folder, select PHIPS_Image_Classifier_8_2.mlapp file.
+    * Right click and select 'Run' option.
+    * Click on "Choose Folder for PHIPS Data" button
+      * The current folder should already be select, which is
+        *  /nas/und/NorthEast/2023/Aircraft/P3_N426NA/FlightData/20230115_1/Analysis/cpi_indivi_images_test/20230115_FL1608_Classification
+      * Click "Open" button.
+. In 2: "Classifier" Use Last_Data, such as Delene_20240711
+      * This is used for the filename of where classification file is saved.
+. In 3: Select Button "Load Existing Classification" or "Make New Classification"
     * Next to Save Button has the file name with your last name.
   * Using Software
@@ Line 25: / Line 34: @@
     * X to kill.
-===== PHIPS Classifier using MATLAB ======
+**Problems/Solutions**
+   *Can't click buttons, error in the code  "Variable/function not recognised."
+     * You have not chosen a file to save your data. Check back to steps 2 and 3.
+**Starting to Classify**
+  *Look over the sources at the top of this page. They will give you a basic understanding of what to look for.
+  *On your screen, you will see the types on the right, confidence level on the bottom, next/previous buttons bellow the types, and special qualities below them.
+  *As you have already chosen a data file, you should see 2 black and white pictures. With knowledge from the sources, look to see if there are any special qualities.
+  *Before moving on to classification, select your confidence level.
+  *Select the classification of the crystal. For single crystals, it will automatically move on to the text photo once a classification is selected.
+    *If Aggregate: You will have to press the "hold" button to choose multiple classifications based on what the aggregate consists of. The different types will not show up in the classification text box, but they are being registered.
+  ***Note: be careful and aware when classifying. The program tends to skip images FREQUENTLY. Press previous to make sure you have classifyed the previous image if you observe a skip.**
+==== Classified Images ====
+|Person          | Flight          | Time Period | Latest/Concatenated File                                                         |
+|Nick Camp       | 20220114_1      |             | IMPACTS_PHIPS_Image_Classification_Camp_20240809.txt                |
+|Christian Nairy | 20220119_105103 |             | IMPACTS_PHIPS_Image_Classification_Camp_20240809.txt                |
+|Christian Nairy | 20220119_105103 |             | IMPACTS_HawkeyeCPI_Image_Classification_Nairy_125130-125225_20231201.txt |
+|Christian Nairy | 20220119_105103 |             | IMPACTS_HawkeyeCPI_Image_Classification_Nairy_122349-122651_20231108.txt |
+|Christian Nairy | 20220119_105103 |             | IMPACTS_HawkeyeCPI_Image_Classification_Nairy_125130-125225_20231201.txt |
+|Christian Nairy | 20220119_105103 |             | IMPACTS_HawkeyeCPI_Image_Classification_Nairy_20231130.txt |
+|Christian Nairy | 20220129_184039 |  |  |
+|Christian Nairy | 20230115_141339 | 15:25:00 - 16:24:03 | IMPACTS_HawkeyeCPI_Image_Classification_Nairy_20230115_152540-162403_20231016.txt |
+|Christian Nairy | 20230115_162943 |  |  |
+|Christian Nairy | 20230216_150059 |  |  |
+** Concatenated File Format: IMPACTS_HawkeyeCPI_Image_Classification_{LAST-NAME}_{FLIGHT-DATE}_{CLASSIFICATION-START}-{CLASSIFICATION-END}_{CLASSIFICATION-FINISH-DATE}**
+===== Particle Habit Imaging and Polar Scattering probe (PHIPS) Classifier using MATLAB ======
 This software was developed by Dr. Emma Jarvinen (jarvinen@ucar.edu) and Dr. Martin Schnaiter (martin.schnaiter@kit.edu) and provides an easy-to-use interface for classifying images of particles taken by the PHIPS instrument.
@@ Line 54: / Line 90: @@
 Depending on how many images you have this may take awhile. When completed you should now have new directories named *_C1-C2 for the corresponding bins.
+===== Image Classification (Python Programs) ======
+==== ADPAA ====
+=== scripts_python/convert_PHIPS2nasa.py ===
+  * Add summary of what code does.
+  * Conrad results of testing for using January 15, 2023 including plotting with aplot.
+=== scripts_python/convert_PHIPS_chains_confidence_1hz_2nasa.py ===
+  * Add summary of what code does.
+=== Make new code for comparison ===
+  * analysis/image_classification/manual_comparison.py